Pulmonary epithelial cells form the first line of defense of human airways against foreign irritants, and also represent as the primary injury target of these pathogenic assaults. Autophagy is a revolutionary conserved ubiquitous process by which cytoplasmic materials are delivered to lysosomes for degradation when facing environmental and/or developmental changes, and emerging evidence suggests that autophagy plays pivotal but controversial roles in pulmonary epithelial injury. Here we review recent studies focusing on the roles of autophagy in regulating airway epithelial injury induced by various stimuli. Articles eligible for this purpose are divided into two groups according to the eventual roles of autophagy, either protective or deleterious. From the evidences summarized in this review, we draw several conclusions: 1) in all cases when autophagy is decreased from its basal level, autophagy is protective; 2) When autophagy is deleterious, it is generally upregulated by stimulation; 3) a plausible conclusion is that the endosomal/exosomal pathways may be associated with the deleterious function of autophagy in airway epithelial injury, while this needs to be clarified in future investigations.