Objective To compare cost estimates for hospital stays calculated using diagnosis‐related group (DRG) weights to actual Medicare payments. Data Sources/Study Setting Medicare MedPAR files and DRG tables linked to participant data from the Study of Osteoporotic Fractures (SOF) from 1992 through 2010. Participants were women age 65 and older recruited in three metropolitan and one rural area of the United States. Study Design Costs were estimated using DRG payment weights for 1,397 hospital stays for 795 SOF participants for 1 year following a hip fracture. Medicare cost estimates included Medicare and secondary insurer payments, and copay and deductible amounts. Principal Findings The mean (SD) of inpatient DRG‐based cost estimates per person‐year were $16,268 ($10,058) compared with $19,937 ($15,531) for MedPAR payments. The correlation between DRG‐based estimates and MedPAR payments was 0.71, and 51 percent of hospital stays were in different quintiles when costs were calculated based on DRG weights compared with MedPAR payments. Conclusions DRG‐based cost estimates of hospital stays differ significantly from Medicare payments, which are adjusted by Medicare for facility and local geographic characteristics. DRG‐based cost estimates may be preferable for analyses when facility and local geographic variation could bias assessment of associations between patient characteristics and costs.